SOFTWARE OR APPLICATION PROBLEMS (Python can’t find the modules I installed, Prokka doesn’t predict any ORFs, etc.)
This started out as a simple tbl2asn reinstall to use Prokka (hadnt used it in a while), but I ended up with a tonne of other issues (after trying to upgrade Prokka, deleting old tbl2asn etc) and this one has finally stumped me. It followed:
brew tap brewsci/bio
Error: ncurses is already installed from homebrew/dupes! Please `brew uninstall ncurses` first." ubuntu@idepidwc:~/ngon$ brew uninstall ncurses Error: could not get runtime dependencies from /mnt/gvl/apps/linuxbrew/Library/Taps/tseemann/homebrew-bioinformatics-linux/Formula/roary.rb! Error: Formulae found in multiple taps: * chapmanb/cbl/vt * brewsci/bio/vt Please use the fully-qualified name (e.g. chapmanb/cbl/vt) to refer to the formula.
This is a GVL instance running at Bham.
Thanks for your help,