module avail
--------------------------------------------------------------- /usr/share/modules/modulefiles ---------------------------------------------------------------
aragorn/1.2.36 gdbm/1.11 picard/1.56.0
atlas/3.10.2 ggplot2/0.9.3 pixman/0.32.4
barrnap/0.7 ghostscript/9.10 pixman/0.32.6
bcbiogff/0.6.2 gnu_coreutils/8.22 prodigal/2.60
biocbasics/2.14 gnu_coreutils/8.25 prokka/1.11
bioc_qvalue/1.34.0 gnu_parallel/20131122 pycogent/1.5.2
biopython/1.65 gnuplot/4.6 pynast/1.2.2
biopython/1.66 graphicsmagick/1.3.18 pysam/0.7.6
blast+/2.2.28 hmmer/3.1b2 pysam/0.7.7
blast+/2.2.31 htseq/0.5.4p3 python/2.7
bowtie/0.12.7 htseq/0.6.1 python/2.7.10
bowtie2/2.2.4 imaging/1.1.7 pyyaml/3.11
bowtie2/2.2.5 infernal/1.1 R/2.11.0
bowtie2/2.2.6 jbrowse/1.12.0 R/2.15.0
bundle_jbrowse/1.12.0 kmergenie/1.6715 R/3.1.2
bwa/0.7.10.039ea20639 lastz/1.02.00 R/3.2.1
bwa/0.7.12 libcurl/7.35 rdp_multi_classifier_1.1/1.1
bx-python/0.7.1 libgd/2.1.0 readline/6.2
bzlib/1.0.6 libmagic/5.25 readline/6.3
cairo/1.12.14 libpng/1.6.7 rpy/1.0.3
clustalw2/2.1 libtool/2.4 samtools/0.1.16
cufflinks/2.2.1 libxml2/2.9.1 samtools/0.1.18
cummeRbund/2.8.2 libxml2/2.9.3 samtools/0.1.19
deseq2/1.8.2 libyaml/0.1.5 samtools/1.2
dot linuxbrew/0.1 snippy/3.0
emboss/5.0.0 Mako/0.7.2 snpEff/4.0
environment_settings/CUFFDIFF_SCRIPT_PATH matplotlib/1.2.1 sqlite/3.8.3
environment_settings/CUMMERBUND_SCRIPT_PATH minced/0.1.6 sra_toolkit/2.5.2
environment_settings/GATK2_PATH MIRA/3.4.1.1 taxonomy/1.0.0
environment_settings/GATK2_SITE_OPTIONS module-git tbl2asn/24.3
ete3/3.0.0b35 module-info tiff/4.0.3
eXpress/1.1.1 modules tophat/2.1.0
ez_setup/0.9 mothur/1.30.2-1.33.3 tophat2/2.0.9
FastQC/0.11.4 mummer/3.23 trimmomatic/0.32
FastTree/2.17 ncbi_vdb/2.5.2 trinityrnaseq/2013_08_14
fastx_toolkit/0.0.13 ncurses/5.9 uclust/1.22.2
fontconfig/2.11.1 ncurses/6.0 use.own
freebayes/0_9_20_b040236 ngs_sdk/1.1.3 varscan/2.3.6
freetype/2.4.11 null vcftools/0.1.11
freetype/2.5.2 numpy/1.7.1 velvet/1.2.10
galaxy-ops/1.0.0 numpy/1.8.1 velvetoptimiser/2.2.5
galaxy_sequence_utils/1.0.0 numpy/1.9 weblogo/3.3
galaxy_sequence_utils/1.0.1 perl/5.18.1 xz/5.0.5
gatk/1.4 picard/1.136 zlib/1.2.8
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homebrew/science/blaze-lib homebrew/science/libdivsufsort homebrew/science/sais
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homebrew/science/bpel2owfn homebrew/science/libpll homebrew/science/samtools ✔
homebrew/science/bpipe homebrew/science/libsbml homebrew/science/samtools-0.1
homebrew/science/butterflow homebrew/science/libsequence homebrew/science/sara
homebrew/science/bwa ✔ homebrew/science/libsigrokdecode homebrew/science/sbagen
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homebrew/science/cddlib homebrew/science/lobstr homebrew/science/seqdb
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homebrew/science/clfft homebrew/science/mathomatic homebrew/science/skewer ✔
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homebrew/science/exonerate ✔ homebrew/science/nlopt homebrew/science/triangle
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homebrew/science/fastqc homebrew/science/oases homebrew/science/trnascan
homebrew/science/fasttree ✔ homebrew/science/oce homebrew/science/ucsc-genome-browser
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homebrew/science/giira homebrew/science/perf homebrew/science/xraylib
homebrew/science/gingr ✔ homebrew/science/petsc homebrew/science/xrmc
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homebrew/science/glimmerhmm homebrew/science/phlawd homebrew/science/yaggo
homebrew/science/glpk homebrew/science/phylip homebrew/science/yaha
homebrew/science/glpk448 homebrew/science/phyml homebrew/science/yass
homebrew/science/gmap-gsnap homebrew/science/phyutility homebrew/science/yeppp
homebrew/science/gmcloser homebrew/science/picard-tools homebrew/science/zoltan