Roary suddenly stopped working (see message below). I receive the same message no matter what roary command I input. I used roary last week and everything went smoothly. I have updated brew, but I get the following message when I try to reinstall roary. I would be very grateful if you can assist me with this.
In a closed feed I noticed another user got the same error message back in June last year but I don’t have conda or miniconda installed so different solution.
ubuntu@gbaprototype-volac1:~/ajb_store/test_Lactobacillus/roary/L_buchneri$ brew reinstall roary
Error: No available formula with the name “Bio::Perl” (dependency of tseemann/bioinformatics-linux/roary)
ubuntu@gbaprototype-volac1:~/ajb_store/test_Lactobacillus/roary/L_buchneri$ roary -h
Can’t locate Bio/Roary/CommandLine/Roary.pm in @INC (you may need to install the Bio::Roary::CommandLine::Roary module) (@INC contains: /home/ubuntu/ajb_store/test_Lactobacillus/roary/L_buchneri/lib /home/linuxbrew/.linuxbrew/Cellar/perl/5.28.0/lib/perl5/site_perl/5.28.0/x86_64-linux-thread-multi /home/linuxbrew/.linuxbrew/Cellar/perl/5.28.0/lib/perl5/site_perl/5.28.0 /home/linuxbrew/.linuxbrew/Cellar/perl/5.28.0/lib/perl5/5.28.0/x86_64-linux-thread-multi /home/linuxbrew/.linuxbrew/Cellar/perl/5.28.0/lib/perl5/5.28.0 /home/linuxbrew/.linuxbrew/lib/perl5/site_perl/5.28.0/x86_64-linux-thread-multi /home/linuxbrew/.linuxbrew/lib/perl5/site_perl/5.28.0) at /usr/local/bin/roary line 12.
BEGIN failed–compilation aborted at /usr/local/bin/roary line 12.